High-precision dosimetry
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== <span style="color:#000080"> Introduction </span> == This tutorial is based on the [http://geant4-dna.org/ Geant4-DNA project] tutorials. We chose to show two of these tutorials: * <span style="color:#ff0000"> dnaphysics </span>: This example shows how to simulate track structures in liquid water using the Geant4-DNA physics processes and models. You can find more information about the process classes and physics list [http://geant4-dna.in2p3.fr/styled-3/styled-8/index.html here] and [http://geant4-dna.in2p3.fr/styled-3/styled-9/index.html here]. The output is type of particle, type of process, energy deposit and energy loss for every simulation step. * <span style="color:#ff0000"> dnageometry </span>: This example simulates the track structure of different charge particles within a simplified geometrical model of the DNA molecule contained in a cell nucleus. The output is type of particle, type of process, energy deposit and energy loss for every simulation step. == <span style="color:#000080"> Setting up the environment </span> == ; Connect to HEP cluster <pre style="color: #800000; background-color: #dcdcdc"> ssh -X username@plus1.hep.ucl.ac.uk password: type your password here cd /home/username/ </pre> ; Setup your environment <pre style="color: #800000; background-color: #dcdcdc"> source /unix/pbt/software/dev/bin/pbt-dev.sh </pre> == <span style="color:#000080"> How to get the code </span> == ; Copy the code to your working directory <pre style="color: #800000; background-color: #dcdcdc"> cp -r /unix/pbt/tutorials/advanced/DNAProject . cd DNAProject </pre> == <span style="color:#000080"> How to run the codes </span> == * <span style="color:#ff0000"> dnaphysics </span>: ; Inside /home/username/DNAProject/ create a directory <pre style="color: #800000; background-color: #dcdcdc"> mkdir dnaphysics_build </pre> ; To compile the code enter this directory and run cmake and make <pre style="color: #800000; background-color: #dcdcdc"> cd dnaphysics_build cmake -DGeant4_DIR=/unix/pbt/software/dev /home/username/DNAProject/dnaphysics make </pre>
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