|
|
| Line 53: |
Line 53: |
| | ** Beam profile from phase space files | | ** Beam profile from phase space files |
| | * [[Several proton beams with spread out Bragg peaks]] is a complex code which shows the dose distribution in water with several incident monoenergetic proton beams. | | * [[Several proton beams with spread out Bragg peaks]] is a complex code which shows the dose distribution in water with several incident monoenergetic proton beams. |
| - |
| |
| - |
| |
| - | === Monoenergetic photon pencil beam incident on a water cube ===
| |
| - | ----
| |
| - | * Introduction
| |
| - |
| |
| - | This example shows the dose distribution in water along the incident photon beam. The beam hits the water cube surface and deposits a dose under the surface of the water. The volume of the water cube is divided into voxels. At each voxel the dose contribution from the pencil beams is summed up and yields the total dose along the beam axis.
| |
| - |
| |
| - | * Setting up the environment
| |
| - |
| |
| - | ; Connect to plus1 cluster and create folder PhotonPencilBeam in your area
| |
| - |
| |
| - | <blockquote>
| |
| - | <span style="color:#800000"> ssh username@plus1.hep.ucl.ac.uk </span> <br/>
| |
| - | <span style="color:#800000"> cd /home/username/ </span> <br/>
| |
| - | <span style="color:#800000"> mkdir PhotonPencilBeam </span> <br/>
| |
| - | <span style="color:#800000"> cd PhotonPencilBeam </span>
| |
| - | </blockquote>
| |
| - |
| |
| - | ; Setup GEANT4 environment
| |
| - |
| |
| - | <blockquote>
| |
| - | <span style="color:#800000"> source GEANT4 script </span>
| |
| - | </blockquote>
| |
| - |
| |
| - | * How to get the code
| |
| - |
| |
| - | ; Copy the code to your area
| |
| - |
| |
| - | <blockquote>
| |
| - | <span style="color:#800000"> cp -r /vasileva/BasicExamples/PhotonPencilBeam_source /username/PhotonPencilBeam/ </span>
| |
| - | </blockquote>
| |
| - |
| |
| - | * How to run the code
| |
| - |
| |
| - | ; Inside /username/PhotonPencilBeam/ create directory
| |
| - |
| |
| - | <blockquote>
| |
| - | <span style="color:#800000"> mkdir PhotonPencilBeam_build </span>
| |
| - | </blockquote>
| |
| - |
| |
| - | ; Change to this directory and run cmake and make to build the PhotonPencilBeam tutorial
| |
| - |
| |
| - | <blockquote>
| |
| - | <span style="color:#800000"> cd PhotonPencilBeam_build </span> <br/>
| |
| - | <span style="color:#800000"> cmake -DGeant4_DIR=/unix/pbt/Software/..../ /username/PhotonPencilBeam_source/ </span> <br/>
| |
| - | <span style="color:#800000"> make </span>
| |
| - | </blockquote>
| |
| - |
| |
| - | * How to analyze data
| |
| - |
| |
| - | === Monoenergetic proton pencil beam incident on a water cube ===
| |
| - | ----
| |
| - | * Introduction
| |
| - | * Setting up the environment
| |
| - | * How to get the code
| |
| - | * How to run the code
| |
| - | * How to analyze data
| |
| - | * Comparison with data from The Clatterbridge Cancer Centre
| |
| - |
| |
| - | === Proton beam with realistic geometry incident on a water cube ===
| |
| - | ----
| |
| - | ==== Gaussian beam profile ====
| |
| - | ----
| |
| - | * Introduction
| |
| - | * Setting up the environment
| |
| - | * How to get the code
| |
| - | * How to run the code
| |
| - | * How to analyze data
| |
| - | * Comparison with data from The Clatterbridge Cancer Centre
| |
| - |
| |
| - | ==== Beam profile from phase space files ====
| |
| - | ----
| |
| - | * Introduction
| |
| - | * Setting up the environment
| |
| - | * How to get the code
| |
| - | * How to run the code
| |
| - | * How to analyze data
| |
| - | * Comparison with data from The Clatterbridge Cancer Centre
| |
| - |
| |
| - | === Several proton beams with spread out Bragg peaks ===
| |
| - | ----
| |
| - | * Introduction
| |
| - | * Setting up the environment
| |
| - | * How to get the code
| |
| - | * How to run the code
| |
| - | * How to analyze data
| |
| | | | |
| | == Advanced tutorials == | | == Advanced tutorials == |
| | ---- | | ---- |
| - | === Cherenkov simulation ===
| + | This section includes several advanced tutorials: |
| - | ----
| + | |
| - | * Introduction
| + | |
| - | * Setting up the environment
| + | |
| - | * How to get the code
| + | |
| - | * How to run the code
| + | |
| - | * How to analyze data
| + | |
| | | | |
| - | === Computed tomography ===
| + | * [[Cherenkov emission]] |
| - | ----
| + | * [[Computed tomography]] |
| - | * Introduction | + | * [[High-precision dosimetry]] |
| - | * Setting up the environment | + | |
| - | * How to get the code | + | |
| - | * How to run the code
| + | |
| - | * How to analyze data
| + | |
| - | | + | |
| - | === High-precision dosimetry ===
| + | |
| - | ----
| + | |
| - | * Introduction
| + | |
| - | * Setting up the environment
| + | |
| - | * How to get the code
| + | |
| - | * How to run the code
| + | |
| - | * How to analyze data
| + | |
| | | | |
| | == Installing GEANT4 software locally == | | == Installing GEANT4 software locally == |
| | ---- | | ---- |
