Monoenergetic photon pencil beam

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== <span style="color:#000080"> Introduction </span> ==
== <span style="color:#000080"> Introduction </span> ==
-
This example shows the dose distribution in water along the incident photon beam. The beam hits the water cube surface and deposits a dose under the surface of the water. The volume of the water cube is divided into slices perpendicular to the incident beam. The dose and energy deposited from the pencil beams at each slice is computed.  
+
This example shows the dose distribution in water along the incident photon beam. The beam hits the water cube surface and deposits a dose under the surface of the water. The volume of the water cube is divided into slices perpendicular to the incident beam. At each slice the deposited dose and energy is computed.  
 +
The slices are created using class '''G4PVReplica'''. The energy and dose are scored using classes '''G4UserSteppingAction''' and '''G4UserRunAction'''. Photons are generated using '''G4ParticleGun''' class. There is an option to chose among several '''EM''' physics lists.
-
== <span style="color:#000080"> Setting up the environment </span> ==
+
http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/g4_00_6000e.png
-
; Connect to HEP cluster and create folder PhotonPB in your area
+
The image shows the water box divided into slices using class '''G4PVReplica'''. Photons are in green, electrons are in red.
 +
 
 +
== <span style="color:#000080"> How to run the tutorial </span> ==
 +
 
 +
; Connect to the HEP cluster and create folder PhotonPBFolder in your area
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
ssh username@plus1.hep.ucl.ac.uk  
+
ssh -X username@plus1.hep.ucl.ac.uk  
-
cd /home/username/
+
username@plus1.hep.ucl.ac.uk's password: type your password here
 +
 +
[username@plus1 ~]$ mkdir PhotonPBFolder
-
mkdir PhotonPB
+
[username@plus1 ~]$ cd PhotonPBFolder  
-
 
+
-
cd PhotonPB  
+
</pre>
</pre>
-
 
+
; Setup your environment
-
; Setup GEANT4 environment
+
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
source /unix/pbt/software/dev/bin/pbt-dev.sh   
+
[username@plus1 PhotonPBFolder]$ source /unix/pbt/software/dev/bin/pbt-dev.sh   
</pre>
</pre>
-
== <span style="color:#000080"> How to get the code </span> ==
+
; Copy the code to your working directory and rename it
-
 
+
-
; Copy the code to your working directory
+
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
cp -r /unix/pbt/tutorials/basic/PhotonPB /home/username/PhotonPB/PhotonPB_source
+
[username@plus1 PhotonPBFolder]$ cp -r /unix/pbt/tutorials/basic/PhotonPB .
 +
 
 +
[username@plus1 PhotonPBFolder]$ mv PhotonPB PhotonPB_source
</pre>
</pre>
-
== <span style="color:#000080"> How to run the code </span> ==
+
; Inside /home/username/PhotonPBFolder/ create a directory
-
 
+
-
; Inside /home/username/PhotonPB/ create a directory
+
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
mkdir PhotonPB_build   
+
[username@plus1 PhotonPBFolder]$ mkdir PhotonPB_build   
</pre>
</pre>
Line 44: Line 46:
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
cd PhotonPB_build  
+
[username@plus1 PhotonPBFolder]$ cd PhotonPB_build  
-
cmake -DGeant4_DIR=/unix/pbt/software/dev /home/username/PhotonPB/PhotonPB_source  
+
[username@plus1 PhotonPB_build]$ cmake -DGeant4_DIR=/unix/pbt/software/dev /home/username/PhotonPBFolder/PhotonPB_source  
-
make   
+
[username@plus1 PhotonPB_build]$ make   
</pre>
</pre>
-
; Run macro gamma.mac. The macro generates 10000 events.
+
; Run macro gamma.mac  
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
./photonPB gamma.mac
+
[username@plus1 PhotonPB_build]$ ./photonPB gamma.mac
</pre>
</pre>
   
   
== <span style="color:#000080"> How to analyze data </span> ==
== <span style="color:#000080"> How to analyze data </span> ==
-
The macro produces a root file '''Gamma.root''' with 1D histogram showing the energy deposition in  
+
The macro produces root file '''Gamma.root''' with a histogram showing the energy deposition in  
-
water box along the beam line. It also produces a text file '''DoseFile.txt''' with  
+
water box along the beam line. It also produces text files: '''DoseFile.txt''' with  
-
energy and dose deposited at each slice of the water box. This is an example output  
+
energy and dose deposited in each slice and '''PlotDose.txt''' with dose deposited in each slice.
-
with the default settings: physics process emstandard_opt0 and incident gamma energy of 20 MeV.  
+
 
 +
=== <span style="color:#000080"> Text files </span> ===
 +
 
 +
This is output from '''DoseFile.txt''' with physics process '''emstandard_opt0''' and incident photon energy of '''20 MeV'''. Use your favorite editor '''pico''', '''vi''', '''emacs''' etc. to open text files. For example, use editor pico:
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
Cumulated Doses :    X[mm] Edep      Edep/Ebeam Dose
+
[username@plus1 PhotonPB_build]$ pico DoseFile.txt
-
layer 1: 10 695.299 MeV 0.347649 % 6.96245e-09 Gy
+
</pre>
-
layer 2: 20 1.17329 GeV 0.586646 % 1.17489e-08 Gy
+
-
layer 3: 30 1.60782 GeV 0.80391 % 1.61001e-08 Gy
+
-
layer 4: 40 1.89698 GeV 0.94849 % 1.89956e-08 Gy
+
-
layer 5: 50 2.23625 GeV 1.11812 % 2.23929e-08 Gy
+
-
layer 6: 60 2.41072 GeV 1.20536 % 2.414e-08 Gy
+
-
layer 7: 70 2.5396 GeV 1.2698 % 2.54306e-08 Gy
+
-
layer 8: 80 2.66291 GeV 1.33145 % 2.66653e-08 Gy
+
-
layer 9: 90 2.5538 GeV 1.2769 % 2.55727e-08 Gy
+
-
layer 10: 100 2.47482 GeV 1.23741 % 2.47819e-08 Gy
+
-
layer 11: 110 2.45013 GeV 1.22507 % 2.45346e-08 Gy
+
-
layer 12: 120 2.34969 GeV 1.17484 % 2.35288e-08 Gy
+
-
layer 13: 130 2.3329 GeV 1.16645 % 2.33608e-08 Gy
+
-
layer 14: 140 2.37302 GeV 1.18651 % 2.37625e-08 Gy
+
-
layer 15: 150 2.4226 GeV 1.2113 % 2.4259e-08 Gy
+
-
layer 16: 160 2.4147 GeV 1.20735 % 2.41799e-08 Gy
+
-
layer 17: 170 2.38873 GeV 1.19437 % 2.39198e-08 Gy
+
-
layer 18: 180 2.36667 GeV 1.18333 % 2.36989e-08 Gy
+
-
layer 19: 190 2.28832 GeV 1.14416 % 2.29143e-08 Gy
+
-
layer 20: 200 8.08046e+167 J  2.52171e+177 % 5.05029e+169 Gy
+
 +
<pre style="color: #800000; background-color: #dcdcdc">
 +
Layers : x[mm] Edep      Edep/Ebeam[%] Dose       Dose/MaxDose[%]
 +
layer 1: 5 119.065 MeV 0.0992211 9.53818e-11 Gy 15.1483
 +
layer 2: 10 206.505 MeV 0.172088 1.65429e-10 Gy 26.2731
 +
layer 3: 15 259.584 MeV 0.21632         2.07949e-10 Gy 33.026
 +
layer 4: 20 311.898 MeV 0.259915 2.49858e-10 Gy 39.6819
 +
layer 5: 25 395.255 MeV 0.329379 3.16634e-10 Gy 50.2871
 +
layer 6: 30 439.052 MeV 0.365876 3.51719e-10 Gy 55.8592
 +
layer 7: 35 503.311 MeV 0.419426 4.03197e-10 Gy 64.0348
 +
layer 8: 40 573.742 MeV 0.478118 4.59618e-10 Gy 72.9954
 +
layer 9: 45 624.707 MeV 0.520589 5.00446e-10 Gy 79.4796
 +
layer 10: 50 678.383 MeV 0.565319 5.43445e-10 Gy 86.3086
 +
layer 11: 55 694.602 MeV 0.578835 5.56437e-10 Gy 88.3721
 +
layer 12: 60 710.771 MeV 0.592309 5.6939e-10 Gy 90.4292
 +
layer 13: 65 744.826 MeV 0.620689 5.96672e-10 Gy 94.762
 +
layer 14: 70 742.436 MeV 0.618697 5.94757e-10 Gy 94.4579
 +
layer 15: 75 771.713 MeV 0.643094 6.1821e-10 Gy 98.1827
 +
layer 16: 80 767.22 MeV 0.63935         6.14611e-10 Gy 97.611
 +
layer 17: 85 775.608 MeV 0.64634         6.21331e-10 Gy 98.6783
 +
layer 18: 90 762.779 MeV 0.635649 6.11053e-10 Gy 97.046
 +
layer 19: 95 785.997 MeV 0.654997 6.29653e-10 Gy 100
 +
layer 20: 100 735.186 MeV 0.612655 5.88949e-10 Gy 93.5355
 +
layer 21: 105 761.414 MeV 0.634512 6.0996e-10 Gy 96.8724
 +
layer 22: 110 721.836 MeV 0.60153         5.78254e-10 Gy 91.837
 +
layer 23: 115 730.726 MeV 0.608939 5.85376e-10 Gy 92.9681
 +
layer 24: 120 728.394 MeV 0.606995 5.83508e-10 Gy 92.6714
 +
layer 25: 125 744.904 MeV 0.620753 5.96734e-10 Gy 94.7719
 +
layer 26: 130 731.53 MeV 0.609608 5.8602e-10 Gy 93.0703
 +
layer 27: 135 702.85 MeV 0.585709 5.63045e-10 Gy 89.4215
 +
layer 28: 140 671.716 MeV 0.559763 5.38104e-10 Gy 85.4604
 +
layer 29: 145 676.297 MeV 0.56358         5.41773e-10 Gy 86.0432
 +
layer 30: 150 653.849 MeV 0.544875 5.23791e-10 Gy 83.1873
 +
layer 31: 155 674.152 MeV 0.561793 5.40055e-10 Gy 85.7703
 +
layer 32: 160 687.008 MeV 0.572507 5.50354e-10 Gy 87.406
 +
layer 33: 165 706.2 MeV 0.5885         5.65729e-10 Gy 89.8478
 +
layer 34: 170 700.841 MeV 0.584034 5.61435e-10 Gy 89.1659
 +
layer 35: 175 686.009 MeV 0.571674 5.49553e-10 Gy 87.2788
 +
layer 36: 180 658.891 MeV 0.549076 5.2783e-10 Gy 83.8287
 +
layer 37: 185 644.999 MeV 0.537499 5.16701e-10 Gy 82.0613
 +
layer 38: 190 655.81 MeV 0.546508 5.25362e-10 Gy 83.4367
 +
layer 39: 195 645.691 MeV 0.538075 5.17255e-10 Gy 82.1493
 +
layer 40: 200 0 eV         0         0 Gy         0
 +
 +
 +
The run consists of 6000 gamma of 20 MeV through 20 cm  of Water (density: 1 g/cm3 )
 +
divided into 40 slices.
-
  The run consists of 10000 gamma of 20 MeV through 20 cm of Water (density: 1 g/cm3 )
+
  Edep is the deposited energy in every slice.
 +
  Total incident energy(Ebeam)= 120 GeV
 +
Total energy deposit= 24.8344 GeV
 +
Dose is the deposited dose in every slice.
 +
MaxDose is the highest dose value from all slices.
</pre>
</pre>
-
You can open Gamma.root file in the following way:
+
This is '''PlotDose.txt'''. These values can be analyzed with MATLAB and ROOT .
 +
 
 +
<pre style="color: #800000; background-color: #dcdcdc"> 
 +
5 15.1483
 +
10 26.2731
 +
15 33.026
 +
20 39.6819
 +
25 50.2871
 +
30 55.8592
 +
35 64.0348
 +
40 72.9954
 +
45 79.4796
 +
50 86.3086
 +
55 88.3721
 +
60 90.4292
 +
65 94.762
 +
70 94.4579
 +
75 98.1827
 +
80 97.611
 +
85 98.6783
 +
90 97.046
 +
95 100
 +
100 93.5355
 +
105 96.8724
 +
110 91.837
 +
115 92.9681
 +
120 92.6714
 +
125 94.7719
 +
130 93.0703
 +
135 89.4215
 +
140 85.4604
 +
145 86.0432
 +
150 83.1873
 +
155 85.7703
 +
160 87.406
 +
165 89.8478
 +
170 89.1659
 +
175 87.2788
 +
180 83.8287
 +
185 82.0613
 +
190 83.4367
 +
195 82.1493
 +
200 0
 +
</pre>
 +
 
 +
=== <span style="color:#000080"> Root file </span> ===
 +
 
 +
Open '''Gamma.root''' file in the following way:
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
root -l Gamma.root
+
[username@plus1 PhotonPB_build]$ root -l Gamma.root
-
new TBrowser
+
root [1] new TBrowser
 +
 
 +
Select ROOT files and Gamma.root
</pre>
</pre>
-
You should get this 1D histogram showing the energy deposition in water box:
+
The histogram inside Gamma.root shows the energy deposition in water box:
   
   
-
[[File:/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/Edep.png|Energy deposit per event along the beam]]
+
http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/Edep_PhotonB1.png  
-
=== Change of physics process ===
+
To exit the ROOT terminal type
-
You can change the physics process by modifying the macro gamma.mac. The default process is
+
<pre style="color: #800000; background-color: #dcdcdc">
-
'''emstandard_opt0''' which is used in high energy experiments. Change
+
.q
 +
</pre>
 +
 
 +
You can plot the dose deposition along the depth of the absorber ('''PlotDose.txt''') using script '''PlotSimulation.C''' from folder '''PhotonPB_source'''. Copy this script to your current '''PhotonPB_build''' directory:
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
/photonPB/phys/addPhysics emstandard_opt0
+
[username@plus1 PhotonPB_build]$ cp /home/username/PhotonPBFolder/PhotonPB_source/PlotSimulation.C .
 +
</pre> 
 +
 
 +
Then run the script:
 +
 
 +
<pre style="color: #800000; background-color: #dcdcdc">
 +
[username@plus1 PhotonPB_build]$ root -l
 +
 
 +
root [1] .x PlotSimulation.C
 +
 
</pre>
</pre>
-
to
+
This will create '''Simulation.root''' file. Open the root file:
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
/photonPB/phys/addPhysics emlivermore
+
[username@plus1 PhotonPB_build]$ root -l Simulation.root
 +
 
 +
root [1] new TBrowser
 +
 
 +
Select ROOT files and Gamma.root
</pre>
</pre>
 +
 +
This is the result:
-
The process '''emlivermore''' is used for low energy physics.
+
http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/DoseDeposition1.png 
-
Now you have to run the code again:
+
You can also plot the file '''PlotDose.txt''' using MATLAB. This software is installed on the plus1 cluster but using it via ssh is not recommended because it is slow. If you have MATLAB installed on your computer you can import the '''PlotDose.txt''' file and plot it. You can also use the MATLAB installed on the computers at the Science Library.
 +
Before proceeding with MATLAB you need to copy the text files from the cluster to your computer. In the terminal at your computer write:
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
./photonPB gamma.mac
+
scp username@plus1.hep.ucl.ac.uk:/home/username/PhotonPBFolder/PhotonPB_build/PlotDose.txt .
</pre>
</pre>
-
=== Change the incident particle energy ===
+
The file '''PlotDose.txt''' will be copied in your current directory. Then, open MATLAB and follow the procedure:
-
You can change the incident energy by modifying the macro gamma.mac. The default energy is 20 MeV.
+
* Import the file: Chose 'HOME' tab and 'Import Data'.
-
This energy is used in radiotherapy. You can change its value and check the efect on the energy deposit.
+
* In the 'Import Data' window select the 'PlotDose.txt' file choosing the right path.  
 +
* In the opened window select the data points in the 'IMPORT' tab. If you like, you can change the name of the variables. For example, 'x' instead of 'VarName1' and 'Dose' instead of 'VarName2'. Then, press 'Import Selection'/'Import Data'. 
 +
* Close the Import Window and in the Command Window type plot(x,Dose). Press Enter.
-
Change
+
This plot will be created with added axis labels and a legend:
 +
 
 +
http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/matlab0photon.png
 +
 
 +
=== <span style="color:#000080"> Run with different settings </span> ===
 +
 
 +
You can change the physics process, incident photon energy, phantom material, number of slices etc. by
 +
modifying the macro gamma.mac. Open the macro with editor pico:
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
 +
[username@plus1 PhotonPB_build]$ pico gamma.mac
 +
</pre> 
 +
 +
This is the content of the macro:
 +
 +
<pre style="color: #800000; background-color: #dcdcdc">
 +
# gamma.mac
 +
#
 +
/control/verbose 2
 +
/run/verbose 2
 +
/tracking/verbose 0
 +
/run/particle/verbose 1
 +
/run/particle/dumpList
 +
#
 +
# set geometry and material
 +
/photonPB/det/setMat Water
 +
#/photonPB/det/setMat Lead
 +
/photonPB/det/setSizeX  20 cm
 +
/photonPB/det/setSizeYZ 20 cm
 +
/photonPB/det/setSliceSizeYZ 20 cm
 +
/photonPB/det/sliceNumber 40
 +
#
 +
# set physics process
 +
/photonPB/phys/addPhysics emstandard_opt0
 +
#/photonPB/phys/addPhysics emlivermore
 +
#/photonPB/phys/addPhysics empenelope
 +
#
 +
# production tresholds (range cut off-
 +
# not bigger than 10% of slice thickness)
 +
/photonPB/phys/setCuts 1 mm
 +
#/photonPB/phys/setGCut 1 um
 +
#/photonPB/phys/setECut 1 um
 +
#/photonPB/phys/setPCut 1 um
 +
#
 +
# initialize
 +
/run/initialize
 +
#
 +
# visualisation
 +
#/control/execute visualisation.mac
 +
 +
# particle gun properties (type of
 +
#particle and energy)
 +
/gun/particle gamma
 +
#/gun/particle e-
/gun/energy 20 MeV
/gun/energy 20 MeV
 +
#
 +
# beam size
 +
#/photonPB/gun/rndm 3 mm
 +
#
 +
# step limit (not bigger than 5% of
 +
# slice thickness)
 +
/photonPB/stepMax 0.5 mm
 +
#
 +
/photonPB/event/printModulo 50
 +
#
 +
# output root file
 +
/analysis/setFileName Gamma
 +
#
 +
# number of events
 +
/run/beamOn 6000
</pre>
</pre>
-
to for example
+
'''Change the physics process'''
 +
 
 +
The default physics process is '''emstandard_opt0'''. This package is used in high energy experiments. In gamma.mac change
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
/gun/energy 10 MeV
+
/photonPB/phys/addPhysics emstandard_opt0
</pre>
</pre>
-
and run the code:
+
to
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
./photonPB gamma.mac
+
/photonPB/phys/addPhysics emlivermore
</pre>
</pre>
-
Keep in mind that the primary particle generation is done at /PhotonPB_source/src/PrimaryGeneratorAction.cc
+
The process '''emlivermore''' is used in low energy physics experiments.
 +
 
 +
'''Change the incident particle energy'''
 +
 
 +
The default energy is 20 MeV. The typical therapeutic beam energy used in radiotherapy is in the interval 0.3 to 20 MeV. In gamma.mac you can change the value of 20 MeV
 +
 
 +
<pre style="color: #800000; background-color: #dcdcdc">
 +
/gun/energy 20 MeV
 +
</pre>
 +
 
 +
to, for example, 1.25 MeV
 +
 
 +
<pre style="color: #800000; background-color: #dcdcdc">
 +
/gun/energy 1.25 MeV
 +
</pre>
 +
 
 +
This is the energy of the photon beams from cobalt-60 therapy machines.
 +
 
 +
Keep in mind that the primary particle generation is done at /PhotonPB_source/src/PrimaryGeneratorAction.cc.
 +
This is part of the PrimaryGeneratorAction.cc:
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
Line 174: Line 367:
</pre>
</pre>
-
means that only one particle is generated and incident from coordinates x0,y0,z0. The default number of
+
means that only one particle is generated, incident from (x0,y0,z0). The default number of
-
events is set to 10000. Therefore 10000 particles are incident to the water box.  
+
events is set to 6000. Therefore, 6000 particles are incident to the water box.  
 +
'''Change the diameter of the beam'''
-
=== Change the material of the phantom ===
+
You can set the diameter of the beam with the command:
-
This experiment is to compute the energy deposition of photons in a water box. However,
+
<pre style="color: #800000; background-color: #dcdcdc">
-
there is an option to change the box material from water to lead. This can be done in 
+
/photonPB/gun/rndm 3 mm
-
gamma.mac.
+
</pre>
-
Change  
+
'''Change the material'''
 +
 
 +
In this example we compute the energy deposition of photons in water box. However,
 +
there is an option to change the box material from water to lead.
 +
 
 +
In gamma.mac change
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
Line 196: Line 395:
</pre>
</pre>
-
and run the code
+
'''Change the type of incident particle'''
 +
 
 +
In gamma.mac change the photon
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
./photonPB gamma.mac
+
/gun/particle gamma
</pre>
</pre>
-
=== Change the number of slices ===
+
to electron
-
You can change the number of water box slices. The default number is 20. Keep in mind that  
+
<pre style="color: #800000; background-color: #dcdcdc">
-
if you want to have bigger number of slices you should also modify the DetectorConstruction.hh file in
+
/gun/particle e-
 +
</pre>
 +
 
 +
'''Change the number of slices'''
 +
 
 +
You can change the number of slices. The default number is 40. Keep in mind that  
 +
if you want to have bigger number of slices you need to modify the file DetectorConstruction.hh in
/PhotonPB_source/include/.
/PhotonPB_source/include/.
-
Change the MaxLayer to your desired value.
+
In DetectorConstruction.hh set MaxLayer to a value which is bigger then the number of your slices. The default number is MaxLayer=50. For example, if you want your box to be divided to 60 slices you need to set the value of MaxLayer to ,for example, 65 then in gamma.mac you need to change the number of slices:
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
const G4int MaxLayer = 20;
+
/photonPB/det/sliceNumber 60
</pre>
</pre>
-
In gamma.mac you should change the number of slices
+
Every time you modify files in directory PhotonPB_source you need to compile your code. In directory PhotonPB_build do
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
/photonPB/det/sliceNumber 20
+
make
</pre>
</pre>
-
Since you modified your code (by changing the file DetectorConstruction.hh) you should
+
then run the macro
-
compile the code. In your PhotonPB_build directory do
+
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
-
make
+
[username@plus1 PhotonPB_build]$ ./photonPB gamma.mac
</pre>
</pre>
 +
 +
=== <span style="color:#000080"> Visualisation </span> ===
 +
 +
If you want to use visualisation, in macro '''gamma.mac''' uncomment the line '''/control/execute visualisation.mac'''. This will run macro '''visualisation.mac''' with a specific visualisation setup.
 +
In this example, we use '''DAWN''' event display. Before running the visualisation look at the [http://geant4.slac.stanford.edu/Presentations/vis/G4DAWNTutorial/G4DAWNTutorial.html DAWN tutorial].
 +
 +
To run the visualisation, uncomment line '''/control/execute visualisation.mac''' and run the 
 +
gamma.mac macro
 +
 +
<pre style="color: #800000; background-color: #dcdcdc">
 +
[username@plus1 PhotonPB_build]$ ./photonPB gamma.mac
 +
</pre>
 +
 +
In addition to the text files the code will create two .prim files, '''g4_00.prim''' and '''g4_01.prim'''. Both files contain detector geometry and particle interactions. While running the gamma.mac you will be asked to open g4_00.prim in DAWN. In the opened window press OK. This will create your first visualisation:
 +
 +
http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/g4_00_6000e.eps
 +
 +
The second file g4_01.prim will not open automatically. It will be created after the running is finished. Open the file in the following way:
 +
 +
<pre style="color: #800000; background-color: #dcdcdc">
 +
[username@plus1 PhotonPB_build]$ dawn g4_01.prim
 +
</pre>
 +
 +
In the DAWN display change the polar and azimuthal angles to 0 and 90 degrees, then press OK.  This will create the image:
 +
 +
http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/g4_01_6000e.eps
 +
 +
The color in the images indicates the type of the particle. Photons are in green, electrons are in red and positrons are in cyan.
 +
 +
== <span style="color:#000080"> Files </span> ==
 +
 +
[[List of monoenergetic photon pencil beam files with brief description]]

Latest revision as of 13:31, 10 September 2014

Retrieved from "https://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/index.php/Monoenergetic_photon_pencil_beam"
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