Photon beam using phase space files
From UCL HEP PBT Wiki
(Difference between revisions)
(Created page with "== <span style="color:#000080"> Introduction </span> == This example shows the dose distribution in water along the incident photon beam. The volume of the water cube is divided...") |
|||
| Line 7: | Line 7: | ||
== <span style="color:#000080"> How to run the tutorial </span> == | == <span style="color:#000080"> How to run the tutorial </span> == | ||
| - | ; Connect to the HEP cluster and create folder | + | ; Connect to the HEP cluster and create folder PhotonPHSPFolder in your area |
<pre style="color: #800000; background-color: #dcdcdc"> | <pre style="color: #800000; background-color: #dcdcdc"> | ||
| Line 14: | Line 14: | ||
username@plus1.hep.ucl.ac.uk's password: type your password here | username@plus1.hep.ucl.ac.uk's password: type your password here | ||
| - | [username@plus1 ~]$ mkdir | + | [username@plus1 ~]$ mkdir PhotonPHSPFolder |
| - | [username@plus1 ~]$ cd | + | [username@plus1 ~]$ cd PhotonPHSPFolder |
</pre> | </pre> | ||
| Line 22: | Line 22: | ||
<pre style="color: #800000; background-color: #dcdcdc"> | <pre style="color: #800000; background-color: #dcdcdc"> | ||
| - | [username@plus1 | + | [username@plus1 PhotonPHSPFolder]$ source /unix/pbt/software/dev/bin/pbt-dev.sh |
</pre> | </pre> | ||
| Line 28: | Line 28: | ||
<pre style="color: #800000; background-color: #dcdcdc"> | <pre style="color: #800000; background-color: #dcdcdc"> | ||
| - | [username@plus1 | + | [username@plus1 PhotonPHSPFolder]$ cp -r /unix/pbt/tutorials/basic/PhotonPHSP . |
| - | [username@plus1 | + | [username@plus1 PhotonPHSPFolder]$ mv PhotonPHS PhotonPHSP_source |
</pre> | </pre> | ||
| - | ; Inside /home/username/ | + | ; Inside /home/username/PhotonPHSPFolder/ create a directory |
<pre style="color: #800000; background-color: #dcdcdc"> | <pre style="color: #800000; background-color: #dcdcdc"> | ||
| - | [username@plus1 | + | [username@plus1 PhotonPHSPFolder]$ mkdir PhotonPHSP_build |
</pre> | </pre> | ||
| Line 42: | Line 42: | ||
<pre style="color: #800000; background-color: #dcdcdc"> | <pre style="color: #800000; background-color: #dcdcdc"> | ||
| - | [username@plus1 | + | [username@plus1 PhotonPHSPFolder]$ cd PhotonPHSP_build |
| - | [username@plus1 | + | [username@plus1 PhotonPHSP_build]$ cmake -DGeant4_DIR=/unix/pbt/software/dev /home/username/PhotonPHSPFolder/PhotonPHSP_source |
| - | [username@plus1 | + | [username@plus1 PhotonPHSP_build]$ make |
</pre> | </pre> | ||
| Line 52: | Line 52: | ||
<pre style="color: #800000; background-color: #dcdcdc"> | <pre style="color: #800000; background-color: #dcdcdc"> | ||
| - | [username@plus1 | + | [username@plus1 PhotonPHSP_build]$ ./photonPHSP gamma.mac |
</pre> | </pre> | ||
Latest revision as of 13:10, 11 September 2014
Contents |
Introduction
This example shows the dose distribution in water along the incident photon beam. The volume of the water cube is divided into slices perpendicular to the incident beam. At each slice the deposited dose and energy is computed.
The slices are created using class G4PVReplica. The energy and dose are scored using classes G4UserSteppingAction and G4UserRunAction. Photons are generated using phase-space data files. You can find more information about phase-space data here. There is an option to chose among several EM physics lists.
How to run the tutorial
- Connect to the HEP cluster and create folder PhotonPHSPFolder in your area
ssh -X username@plus1.hep.ucl.ac.uk username@plus1.hep.ucl.ac.uk's password: type your password here [username@plus1 ~]$ mkdir PhotonPHSPFolder [username@plus1 ~]$ cd PhotonPHSPFolder
- Setup your environment
[username@plus1 PhotonPHSPFolder]$ source /unix/pbt/software/dev/bin/pbt-dev.sh
- Copy the code to your working directory and rename it
[username@plus1 PhotonPHSPFolder]$ cp -r /unix/pbt/tutorials/basic/PhotonPHSP . [username@plus1 PhotonPHSPFolder]$ mv PhotonPHS PhotonPHSP_source
- Inside /home/username/PhotonPHSPFolder/ create a directory
[username@plus1 PhotonPHSPFolder]$ mkdir PhotonPHSP_build
- To compile the code enter this directory and run cmake and make
[username@plus1 PhotonPHSPFolder]$ cd PhotonPHSP_build [username@plus1 PhotonPHSP_build]$ cmake -DGeant4_DIR=/unix/pbt/software/dev /home/username/PhotonPHSPFolder/PhotonPHSP_source [username@plus1 PhotonPHSP_build]$ make
- Run macro gamma.mac
[username@plus1 PhotonPHSP_build]$ ./photonPHSP gamma.mac
