Photon beam using phase space files

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(Created page with "== <span style="color:#000080"> Introduction </span> == This example shows the dose distribution in water along the incident photon beam. The volume of the water cube is divided...")
 
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== <span style="color:#000080"> How to run the tutorial </span> ==  
== <span style="color:#000080"> How to run the tutorial </span> ==  
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; Connect to the HEP cluster and create folder PhotonPHSFolder in your area
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; Connect to the HEP cluster and create folder PhotonPHSPFolder in your area
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
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username@plus1.hep.ucl.ac.uk's password: type your password here
username@plus1.hep.ucl.ac.uk's password: type your password here
   
   
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[username@plus1 ~]$ mkdir PhotonPHSFolder
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[username@plus1 ~]$ mkdir PhotonPHSPFolder
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[username@plus1 ~]$ cd PhotonPHSFolder  
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[username@plus1 ~]$ cd PhotonPHSPFolder  
</pre>
</pre>
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<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
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[username@plus1 PhotonPHSFolder]$ source /unix/pbt/software/dev/bin/pbt-dev.sh   
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[username@plus1 PhotonPHSPFolder]$ source /unix/pbt/software/dev/bin/pbt-dev.sh   
</pre>
</pre>
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<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
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[username@plus1 PhotonPHSFolder]$ cp -r /unix/pbt/tutorials/basic/PhotonPHS .
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[username@plus1 PhotonPHSPFolder]$ cp -r /unix/pbt/tutorials/basic/PhotonPHSP .
    
    
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[username@plus1 PhotonPHSFolder]$ mv PhotonPHS PhotonPHS_source
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[username@plus1 PhotonPHSPFolder]$ mv PhotonPHS PhotonPHSP_source
</pre>
</pre>
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; Inside /home/username/PhotonPHSFolder/ create a directory
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; Inside /home/username/PhotonPHSPFolder/ create a directory
<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
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[username@plus1 PhotonPHSFolder]$ mkdir PhotonPHS_build  
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[username@plus1 PhotonPHSPFolder]$ mkdir PhotonPHSP_build  
</pre>
</pre>
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<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
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[username@plus1 PhotonPHSFolder]$ cd PhotonPHS_build
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[username@plus1 PhotonPHSPFolder]$ cd PhotonPHSP_build
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[username@plus1 PhotonPHS_build]$ cmake -DGeant4_DIR=/unix/pbt/software/dev /home/username/PhotonPHSFolder/PhotonPHS_source
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[username@plus1 PhotonPHSP_build]$ cmake -DGeant4_DIR=/unix/pbt/software/dev /home/username/PhotonPHSPFolder/PhotonPHSP_source
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[username@plus1 PhotonPHS_build]$ make   
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[username@plus1 PhotonPHSP_build]$ make   
</pre>
</pre>
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<pre style="color: #800000; background-color: #dcdcdc">
<pre style="color: #800000; background-color: #dcdcdc">
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[username@plus1 PhotonPHS_build]$ ./photonPHS gamma.mac
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[username@plus1 PhotonPHSP_build]$ ./photonPHSP gamma.mac
</pre>
</pre>
   
   

Latest revision as of 13:10, 11 September 2014

Contents

Introduction

This example shows the dose distribution in water along the incident photon beam. The volume of the water cube is divided into slices perpendicular to the incident beam. At each slice the deposited dose and energy is computed.

The slices are created using class G4PVReplica. The energy and dose are scored using classes G4UserSteppingAction and G4UserRunAction. Photons are generated using phase-space data files. You can find more information about phase-space data here. There is an option to chose among several EM physics lists.

How to run the tutorial

Connect to the HEP cluster and create folder PhotonPHSPFolder in your area
ssh -X username@plus1.hep.ucl.ac.uk 

username@plus1.hep.ucl.ac.uk's password: type your password here
 
[username@plus1 ~]$ mkdir PhotonPHSPFolder 

[username@plus1 ~]$ cd PhotonPHSPFolder  
Setup your environment
[username@plus1 PhotonPHSPFolder]$ source /unix/pbt/software/dev/bin/pbt-dev.sh  
Copy the code to your working directory and rename it
[username@plus1 PhotonPHSPFolder]$ cp -r /unix/pbt/tutorials/basic/PhotonPHSP .
  
[username@plus1 PhotonPHSPFolder]$ mv PhotonPHS PhotonPHSP_source
Inside /home/username/PhotonPHSPFolder/ create a directory
[username@plus1 PhotonPHSPFolder]$ mkdir PhotonPHSP_build  
To compile the code enter this directory and run cmake and make
[username@plus1 PhotonPHSPFolder]$ cd PhotonPHSP_build 

[username@plus1 PhotonPHSP_build]$ cmake -DGeant4_DIR=/unix/pbt/software/dev /home/username/PhotonPHSPFolder/PhotonPHSP_source 

[username@plus1 PhotonPHSP_build]$ make  
Run macro gamma.mac
[username@plus1 PhotonPHSP_build]$ ./photonPHSP gamma.mac

How to analyze data

Text files

Run with different settings

Visualisation

Files

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