Monoenergetic photon pencil beam - Revision history

IlinaMediaWiki at 13:31, 10 September 2014

2014-09-10T13:31:55Z

← Older revision		Revision as of 13:31, 10 September 2014
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	* Close the Import Window and in the Command Window type plot(x,Dose). Press Enter.		* Close the Import Window and in the Command Window type plot(x,Dose). Press Enter.

-	This plot will be created:	+	This plot will be created with added axis labels and a legend:

	http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/matlab0photon.png		http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/matlab0photon.png

IlinaMediaWiki at 13:29, 10 September 2014

2014-09-10T13:29:42Z

← Older revision		Revision as of 13:29, 10 September 2014
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	This plot will be created:		This plot will be created:

-		+	http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/matlab0photon.png

	=== <span style="color:#000080"> Run with different settings </span> ===		=== <span style="color:#000080"> Run with different settings </span> ===

IlinaMediaWiki at 11:34, 10 September 2014

2014-09-10T11:34:34Z

← Older revision		Revision as of 11:34, 10 September 2014
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	<pre style="color: #800000; background-color: #dcdcdc">		<pre style="color: #800000; background-color: #dcdcdc">
-	cp username@plus1.hep.ucl.ac.uk:/home/username/.~~...~~ .	+	scp username@plus1.hep.ucl.ac.uk:/home/username/PhotonPBFolder/PhotonPB_build/PlotDose.txt .
	</pre>		</pre>

		+	The file '''PlotDose.txt''' will be copied in your current directory. Then, open MATLAB and follow the procedure:

	* Import the file: Chose 'HOME' tab and 'Import Data'.		* Import the file: Chose 'HOME' tab and 'Import Data'.
-	* ~~Select~~ the data points in the ~~opened window~~ and press 'Import Selection'	+	* In the 'Import Data' window select the 'PlotDose.txt' file choosing the right path.
-	* Close the Import Window and in the Command Window type plot(~~xmm~~, ~~DoseMaxDose~~)	+	* In the opened window select the data points in the 'IMPORT' tab. If you like, you can change the name of the variables. For example, 'x' instead of 'VarName1' and 'Dose' instead of 'VarName2'. Then, press 'Import Selection'/'Import Data'.
		+	* Close the Import Window and in the Command Window type plot(x,Dose). Press Enter.
		+
		+	This plot will be created:
		+
		+

	=== <span style="color:#000080"> Run with different settings </span> ===		=== <span style="color:#000080"> Run with different settings </span> ===

IlinaMediaWiki at 09:58, 10 September 2014

2014-09-10T09:58:29Z

← Older revision		Revision as of 09:58, 10 September 2014
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	http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/DoseDeposition1.png		http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/DoseDeposition1.png

-	You can also plot the file '''PlotDose.txt''' using MATLAB. This software is installed on the plus1 cluster but using it via ssh is not recommended because it is slow. If you have ~~local installation of~~ MATLAB you can import the '''PlotDose.txt''' file and plot it. ~~This is~~ the ~~procedure~~:	+	You can also plot the file '''PlotDose.txt''' using MATLAB. This software is installed on the plus1 cluster but using it via ssh is not recommended because it is slow. If you have MATLAB installed on your computer you can import the '''PlotDose.txt''' file and plot it. You can also use the MATLAB installed on the computers at the Science Library.
		+	Before proceeding with MATLAB you need to copy the text files from the cluster to your computer. In the terminal at your computer write:

-	* Import the file: Chose '~~Home~~' tab and 'Import Data'	+	<pre style="color: #800000; background-color: #dcdcdc">
		+	cp username@plus1.hep.ucl.ac.uk:/home/username/.... .
		+	</pre>
		+
		+
		+	* Import the file: Chose 'HOME' tab and 'Import Data'.
	* Select the data points in the opened window and press 'Import Selection'		* Select the data points in the opened window and press 'Import Selection'
	* Close the Import Window and in the Command Window type plot(xmm, DoseMaxDose)		* Close the Import Window and in the Command Window type plot(xmm, DoseMaxDose)

IlinaMediaWiki at 19:00, 3 September 2014

2014-09-03T19:00:48Z

← Older revision		Revision as of 19:00, 3 September 2014
Line 6:		Line 6:

	http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/g4_00_6000e.png		http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/g4_00_6000e.png
		+
		+	The image shows the water box divided into slices using class '''G4PVReplica'''. Photons are in green, electrons are in red.

	== <span style="color:#000080"> How to run the tutorial </span> ==		== <span style="color:#000080"> How to run the tutorial </span> ==

IlinaMediaWiki at 13:07, 2 September 2014

2014-09-02T13:07:49Z

← Older revision		Revision as of 13:07, 2 September 2014
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	http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/DoseDeposition1.png		http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/DoseDeposition1.png
		+
		+	You can also plot the file '''PlotDose.txt''' using MATLAB. This software is installed on the plus1 cluster but using it via ssh is not recommended because it is slow. If you have local installation of MATLAB you can import the '''PlotDose.txt''' file and plot it. This is the procedure:
		+
		+	* Import the file: Chose 'Home' tab and 'Import Data'
		+	* Select the data points in the opened window and press 'Import Selection'
		+	* Close the Import Window and in the Command Window type plot(xmm, DoseMaxDose)

	=== <span style="color:#000080"> Run with different settings </span> ===		=== <span style="color:#000080"> Run with different settings </span> ===

IlinaMediaWiki at 10:02, 1 September 2014

2014-09-01T10:02:34Z

← Older revision		Revision as of 10:02, 1 September 2014
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	http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/DoseDeposition1.png		http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/DoseDeposition1.png

-	=== <span style="color:#000080"> ~~Changes in macro gamma.mac~~ </span> ===	+	=== <span style="color:#000080"> Run with different settings </span> ===

	You can change the physics process, incident photon energy, phantom material, number of slices etc. by		You can change the physics process, incident photon energy, phantom material, number of slices etc. by

IlinaMediaWiki at 15:39, 31 August 2014

2014-08-31T15:39:25Z

← Older revision		Revision as of 15:39, 31 August 2014
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	</pre>		</pre>

-	; Run macro gamma.mac~~. The macro generates 6000 events.~~	+	; Run macro gamma.mac

	<pre style="color: #800000; background-color: #dcdcdc">		<pre style="color: #800000; background-color: #dcdcdc">

IlinaMediaWiki at 15:22, 31 August 2014

2014-08-31T15:22:00Z

← Older revision		Revision as of 15:22, 31 August 2014
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	http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/g4_00_6000e.png		http://www.hep.ucl.ac.uk/pbt/RadiotherapyWorkbook/skins/common/images/PhotonPB/g4_00_6000e.png

-	== <span style="color:#000080"> ~~Setting up~~ the ~~environment~~ </span> ==	+	== <span style="color:#000080"> How to run the tutorial </span> ==

	; Connect to the HEP cluster and create folder PhotonPBFolder in your area		; Connect to the HEP cluster and create folder PhotonPBFolder in your area
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	[username@plus1 PhotonPBFolder]$ source /unix/pbt/software/dev/bin/pbt-dev.sh		[username@plus1 PhotonPBFolder]$ source /unix/pbt/software/dev/bin/pbt-dev.sh
	</pre>		</pre>
-
-	~~== <span style="color:#000080"> How to get the code </span> ==~~

	; Copy the code to your working directory and rename it		; Copy the code to your working directory and rename it
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	[username@plus1 PhotonPBFolder]$ mv PhotonPB PhotonPB_source		[username@plus1 PhotonPBFolder]$ mv PhotonPB PhotonPB_source
	</pre>		</pre>
-
-	~~== <span style="color:#000080"> How to run the code </span> ==~~

	; Inside /home/username/PhotonPBFolder/ create a directory		; Inside /home/username/PhotonPBFolder/ create a directory

IlinaMediaWiki at 14:30, 31 August 2014

2014-08-31T14:30:14Z

← Older revision		Revision as of 14:30, 31 August 2014
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	== <span style="color:#000080"> Setting up the environment </span> ==		== <span style="color:#000080"> Setting up the environment </span> ==

-	; Connect to HEP cluster and create folder PhotonPBFolder in your area	+	; Connect to the HEP cluster and create folder PhotonPBFolder in your area

	<pre style="color: #800000; background-color: #dcdcdc">		<pre style="color: #800000; background-color: #dcdcdc">