ELogs/MatthieuHentz - Revision history

MatthieuHentz: /* Lower priority */

2019-02-19T12:19:11Z

Lower priority

← Older revision		Revision as of 12:19, 19 February 2019
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	** Concatenating run ID and event ID to a long string does not work as the string is truncated for some reason.		** Concatenating run ID and event ID to a long string does not work as the string is truncated for some reason.
	** Alternative: Use a short hash? -> Need a hash function		** Alternative: Use a short hash? -> Need a hash function
			* Write script to move the required number of projection files into the current directory
			* Edit script 'backproject' to take an argument for the number of projections used

	== Completed ==		== Completed ==

MatthieuHentz at 10:28, 19 February 2019

2019-02-19T10:28:07Z

← Older revision		Revision as of 10:28, 19 February 2019
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	=== Higher priority ===		=== Higher priority ===
	* Work on progress report		* Work on progress report
	* Write code for benchmarking metrics analysis: ~~MTF,~~ CDF, noise and relative error		* Write code for benchmarking metrics analysis: CDF, noise and relative error
	* Get in touch with R Schulte to get access to DROP and TVS-DROP algorithms		** Design more appropriate phantom to evaluate MTF (cf. Plautz et al., 2016 and Mori and Machida, 2009)
			* Get in touch with R Schulte to get access to DROP and TVS-DROP algorithms (Update 18/02/2019: Ask Robert Johnson (rjohnson@ucsc.edu) for access to GitHub repo.)
	* Run preliminary simulations to test the metrics		* Run preliminary simulations to test the metrics

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	== Completed ==		== Completed ==
	* (01/02/~~2018~~) Implement phantoms to be used to determine MTF and CDF in Geant4: one uniform phantom with a single central non-uniform pixel and another truly uniform phantom		* (01/02/2019) Implement phantoms to be used to determine MTF and CDF in Geant4: one uniform phantom with a single central non-uniform pixel and another truly uniform phantom
			* (14/02/2019) Write code for benchmarking metrics analysis: MTF

	== Current Reading List ==		== Current Reading List ==

			=== Image quality assessment ===
			* Plautz et al. (including Schulte) 2016 An evaluation of spatial resolution of a prototype proton CT scanner ''Med. Phys.'' '''43''' (12)

			=== Proton CT ===
	* Paganetti H 2012 Range uncertainties in proton therapy and the role of Monte Carlo simulations ''Phys. Med. Biol.'' '''57'''		* Paganetti H 2012 Range uncertainties in proton therapy and the role of Monte Carlo simulations ''Phys. Med. Biol.'' '''57'''
	* Johnson R P 2018 Review of medical radiography and tomography with proton beams ''Rep. Prog. Phys.'' '''81'''		* Johnson R P 2018 Review of medical radiography and tomography with proton beams ''Rep. Prog. Phys.'' '''81'''

MatthieuHentz: /* Completed */

2019-02-06T14:50:15Z

Completed

← Older revision		Revision as of 14:50, 6 February 2019
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	== Completed ==		== Completed ==
	* Implement phantoms to be used to determine MTF and CDF in Geant4: one uniform phantom with a single central non-uniform pixel and another truly uniform phantom ~~(01/02/2018)~~		* (01/02/2018) Implement phantoms to be used to determine MTF and CDF in Geant4: one uniform phantom with a single central non-uniform pixel and another truly uniform phantom

	== Current Reading List ==		== Current Reading List ==

MatthieuHentz: /* Completed */

2019-02-06T14:50:01Z

Completed

← Older revision		Revision as of 14:50, 6 February 2019
Line 19:		Line 19:

	== Completed ==		== Completed ==
			* Implement phantoms to be used to determine MTF and CDF in Geant4: one uniform phantom with a single central non-uniform pixel and another truly uniform phantom (01/02/2018)

	== Current Reading List ==		== Current Reading List ==

MatthieuHentz: /* To Do */

2019-02-06T14:49:27Z

To Do

← Older revision		Revision as of 14:49, 6 February 2019
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	=== Higher priority ===		=== Higher priority ===
	* Work on progress report		* Work on progress report
	* Implement phantoms to be used to determine MTF and CDF in Geant4: one uniform phantom with a single central non-uniform pixel and another truly uniform phantom
	* Write code for benchmarking metrics analysis: MTF, CDF, noise and relative error		* Write code for benchmarking metrics analysis: MTF, CDF, noise and relative error
	* Get in touch with R Schulte to get access to DROP and TVS-DROP algorithms		* Get in touch with R Schulte to get access to DROP and TVS-DROP algorithms

MatthieuHentz at 11:06, 24 January 2019

2019-01-24T11:06:03Z

← Older revision		Revision as of 11:06, 24 January 2019
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	== Completed ==		== Completed ==

			== Current Reading List ==
			* Paganetti H 2012 Range uncertainties in proton therapy and the role of Monte Carlo simulations ''Phys. Med. Biol.'' '''57'''
			* Johnson R P 2018 Review of medical radiography and tomography with proton beams ''Rep. Prog. Phys.'' '''81'''
			* Arbor N ''et al.'' 2015 Monte Carlo comparison of x-ray and proton CT for range calculations of proton therapy beams ''Phys. Med. Biol.'' '''60'''
			* Rädler M 2018 Two-dimensional noise reconstruction in proton computed tomography using distance-driven filtered back-projection of simulated projections ''Phys. Med. Biol.'' '''63'''
			* Brooke M and Penfold S 2018 An inhomogeneous most likely path formalism for proton computed tomography ''arXiv:1808.00122v1''

MatthieuHentz: /* To Do */

2019-01-23T19:38:59Z

To Do

← Older revision		Revision as of 19:38, 23 January 2019
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	== To Do ==		== To Do ==
	* ~~Write~~ progress report		=== Urgent ===
			* Nada

			=== Higher priority ===
			* Work on progress report
			* Implement phantoms to be used to determine MTF and CDF in Geant4: one uniform phantom with a single central non-uniform pixel and another truly uniform phantom
			* Write code for benchmarking metrics analysis: MTF, CDF, noise and relative error
			* Get in touch with R Schulte to get access to DROP and TVS-DROP algorithms
			* Run preliminary simulations to test the metrics

			=== Lower priority ===
	* Do reconstruction of simulation with >1 billion protons		* Do reconstruction of simulation with >1 billion protons
	* Convert ITK images to DICOM		* Convert ITK images to DICOM
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	** Concatenating run ID and event ID to a long string does not work as the string is truncated for some reason.		** Concatenating run ID and event ID to a long string does not work as the string is truncated for some reason.
	** Alternative: Use a short hash? -> Need a hash function		** Alternative: Use a short hash? -> Need a hash function


	== Completed ==		== Completed ==

MatthieuHentz at 11:48, 14 January 2019

2019-01-14T11:48:00Z

← Older revision		Revision as of 11:48, 14 January 2019
Line 2:		Line 2:

	== To Do ==		== To Do ==
			* Write progress report
			* Do reconstruction of simulation with >1 billion protons
			* Convert ITK images to DICOM
			* Assign ID to each proton to simplify matching
			** Concatenating run ID and event ID to a long string does not work as the string is truncated for some reason.
			** Alternative: Use a short hash? -> Need a hash function


			== Completed ==

MatthieuHentz at 11:30, 14 January 2019

2019-01-14T11:30:48Z

← Older revision		Revision as of 11:30, 14 January 2019
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	Electronic Log for Matthieu Hentz		Electronic Log for Matthieu Hentz

			== To Do ==

SimonJolly: Created page with "Electronic Log for Matthieu Hentz"

2019-01-10T13:24:16Z

Created page with "Electronic Log for Matthieu Hentz"

New page

Electronic Log for Matthieu Hentz