AtlasPathena < Main

---++*Distributed Analysis on Panda*
This page describes how to submit user analysis jobs from LCG/OSG/NG to the OSG production system (Panda) from UCL.
Detailed Information about DA on Panda can be found here: [[https://twiki.cern.ch/twiki/bin/view/Atlas/DAonPanda]].

In order to set up pathena at UCL, follow the instructions below:

First, make sure you have a grid certificate. See Starting on the Grid. You should have usercert.pem and userkey.pem under ~/.globus.
Then setup Athena because pathena works in the Athena runtime environment.

Then checkout PandaTools which contains pathena (for 13.0.X or 12.0.X, instructions for 11.0.X can be found here [[https://twiki.cern.ch/twiki/bin/view/Atlas/DAonPanda]]):

<pre>
cd /somewhere/workarea      //this is your workarea where your analysis code is in, eg: testarea1206/12.0.6/
export CMTPATH=`pwd`:${CMTPATH}
export PATHENA_GRID_SETUP_SH=/usr/local/glite/etc/profile.d/grid_env.sh
cmt co PhysicsAnalysis/DistributedAnalysis/PandaTools
cd PhysicsAnalysis/DistributedAnalysis/PandaTools/cmt
source setup.sh
make
cd /somewhere/workarea/.../somedirectory              //this means go to your run directory in your analysis code
mkdir run       //create a run directory if you don't have one
cd run
</pre>


When you run Athena with:  
<pre>
athena jobO_1.py jobO_2.py jobO_3.py
</pre>

all you need is

<pre>
pathena jobO_1.py jobO_2.py jobO_3.py [--inDS inputDataset] --outDS outputDataset
</pre>

where inputDataset is a dataset which contains input files, and outputDataset is a dataset which will contain output files. For details about options, see pathena. 
More options can be found here:[[https://twiki.cern.ch/twiki/bin/view/Atlas/DAonPanda#pathena]]

---++*Update your pathena version*
If you get an error message: 52 ERROR : could not access DQ2 server
then you have to update your pathena version.
Here are two links for updating dq2 and pathena:
[[https://twiki.cern.ch/twiki/bin/view/Atlas/UsingDQ2#How_to_migrate_to_DQ2_0_3]]
[[https://twiki.cern.ch/twiki/bin/view/Atlas/DAonPanda#How_to_migrate_to_DQ2_0_3]]

The following describes how to update your existing version of pathena:

(1) Firstly Remove Existing Panda Tools
<pre>
cd ~/somewhere/12.0.6/PhysicsAnalysis/DistributedAnalysis/PandaTools/cmt
gmake clean
cd ../../../
rm -r DistributedAnalysis
</pre>

(2)Now check it out again:
<pre>
cd ~/somedirectory/12.0.6
cmt co PhysicsAnalysis/DistributedAnalysis/PandaTools
cd PhysicsAnalysis/DistributedAnalysis/PandaTools/cmt
source setup.sh
make
</pre>

(3)Do a CVS update
<pre>
cd ~/somedirectory/12.0.6/PhysicsAnalysis/DistributedAnalysis/PandaTools
cvs update
</pre>

(4) Check that you have the latest version
<pre>
cvs status ChangeLog 
</pre>

You should see Working Revision:  1.7

(5) Last step:
<pre>
cd cmt
setup.sh
make
</pre>

---++*Monitoring*

The Panda interface for monitoring your jobs is pretty good. You can visit a webpage with a url like this:

http://gridui02.usatlas.bnl.gov:25880/server/pandamon/query?ui=user&name=adamdavison

Obviously replacing adamdavison with your own username. Your username appears to be the name field of your grid certificate.

-- Main.AdamD - 23 Jul 2007
-- Main.CatrinBernius - 19 Jun 2007
This topic: Main > HEPGroup > AtlasStuff > AtlasPathena
Topic revision: r4 - 2007-07-23 - AdamD